RuleBuilderLinuxBug
From BioNetWiki
This might be the Gnome Display Manager bug you referred to. I am running Ubuntu 9.04
The console log is below. Let me know if you need me to test any changed versions.
Peter (pcmarks)
pcmarks@mri-deux:~/programs/BioNetGen/RuleBuilder$ java -jar RuleBuilder-beta-1.51.jar
You are using Java Virtual Machine (JVM) version 1.6.0_16
on operating system Linux version 2.6.28-18-generic
This version of the JVM should work fine.
Launcher Args:
Args: no_path
Starting with file null
Class Path: jar:file:/home/pcmarks/programs/BioNetGen/RuleBuilder/RuleBuilder-beta-1.51.jar!/RuleBuilder.class
File Path: /home/pcmarks/programs/BioNetGen/RuleBuilder/RuleBuilder-beta-1.51.jar
Configuration path: /home/pcmarks/programs/BioNetGen/RuleBuilder/rulebuilder.cfg
Loading configuration from /home/pcmarks/programs/BioNetGen/RuleBuilder/rulebuilder.cfg
Using: com.sun.java.swing.plaf.gtk.GTKLookAndFeel
Generated ID: 0
java.awt.event.ItemEvent[ITEM_STATE_CHANGED,item=javax.swing.JCheckBoxMenuItem[,0,0,0x0,invalid,alignmentX=0.0,alignmentY=0.0,border=javax.swing.plaf.synth.SynthBorder@614a75bb,flags=256,maximumSize=,minimumSize=,preferredSize=,defaultIcon=,disabledIcon=,disabledSelectedIcon=,margin=javax.swing.plaf.InsetsUIResource[top=0,left=0,bottom=0,right=0],paintBorder=false,paintFocus=false,pressedIcon=,rolloverEnabled=false,rolloverIcon=,rolloverSelectedIcon=,selectedIcon=,text=Debug Output Window],stateChange=SELECTED] on javax.swing.JCheckBoxMenuItem[,0,0,0x0,invalid,alignmentX=0.0,alignmentY=0.0,border=javax.swing.plaf.synth.SynthBorder@614a75bb,flags=256,maximumSize=,minimumSize=,preferredSize=,defaultIcon=,disabledIcon=,disabledSelectedIcon=,margin=javax.swing.plaf.InsetsUIResource[top=0,left=0,bottom=0,right=0],paintBorder=false,paintFocus=false,pressedIcon=,rolloverEnabled=false,rolloverIcon=,rolloverSelectedIcon=,selectedIcon=,text=Debug Output Window]
User requested that the debug frame be displayed Searching the deselected InternalFrame's 1 components for a WidgetPanel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type javax.swing.JTextArea Frame iconified java.awt.event.ItemEvent[ITEM_STATE_CHANGED,item=javax.swing.JCheckBoxMenuItem[,0,0,0x0,invalid,alignmentX=0.0,alignmentY=0.0,border=javax.swing.plaf.synth.SynthBorder@614a75bb,flags=256,maximumSize=,minimumSize=,preferredSize=,defaultIcon=,disabledIcon=,disabledSelectedIcon=,margin=javax.swing.plaf.InsetsUIResource[top=0,left=0,bottom=0,right=0],paintBorder=false,paintFocus=false,pressedIcon=,rolloverEnabled=false,rolloverIcon=,rolloverSelectedIcon=,selectedIcon=,text=Debug Output Window],stateChange=DESELECTED] on javax.swing.JCheckBoxMenuItem[,0,0,0x0,invalid,alignmentX=0.0,alignmentY=0.0,border=javax.swing.plaf.synth.SynthBorder@614a75bb,flags=256,maximumSize=,minimumSize=,preferredSize=,defaultIcon=,disabledIcon=,disabledSelectedIcon=,margin=javax.swing.plaf.InsetsUIResource[top=0,left=0,bottom=0,right=0],paintBorder=false,paintFocus=false,pressedIcon=,rolloverEnabled=false,rolloverIcon=,rolloverSelectedIcon=,selectedIcon=,text=Debug Output Window]
User requested that the debug frame be hidden Searching the deselected InternalFrame's 1 components for a WidgetPanel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type javax.swing.JTextArea Searching the deselected InternalFrame's 3 components for a WidgetPanel Found a component of type javax.swing.JLabel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type WidgetPanel Found a WidgetPanel in the active internal frame Clearing Selections Found a component of type javax.swing.JSlider Generated ID: 1 Searching the deselected InternalFrame's 1 components for a WidgetPanel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type MoleculePalette Found a WidgetPanel in the active internal frame Clearing Selections Generated ID: 2 Searching the deselected InternalFrame's 1 components for a WidgetPanel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type SearchPalette Found a WidgetPanel in the active internal frame Clearing Selections Generated ID: 3 Searching the deselected InternalFrame's 1 components for a WidgetPanel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type SpeciesPalette Found a WidgetPanel in the active internal frame Generated ID: 4 java.awt.event.ItemEvent[ITEM_STATE_CHANGED,item=javax.swing.JCheckBoxMenuItem[,0,0,0x0,invalid,alignmentX=0.0,alignmentY=0.0,border=javax.swing.plaf.synth.SynthBorder@4245c97b,flags=256,maximumSize=,minimumSize=,preferredSize=,defaultIcon=,disabledIcon=,disabledSelectedIcon=,margin=javax.swing.plaf.InsetsUIResource[top=0,left=0,bottom=0,right=0],paintBorder=false,paintFocus=false,pressedIcon=,rolloverEnabled=false,rolloverIcon=,rolloverSelectedIcon=,selectedIcon=,text=Observables Palette],stateChange=SELECTED] on javax.swing.JCheckBoxMenuItem[,0,0,0x0,invalid,alignmentX=0.0,alignmentY=0.0,border=javax.swing.plaf.synth.SynthBorder@4245c97b,flags=256,maximumSize=,minimumSize=,preferredSize=,defaultIcon=,disabledIcon=,disabledSelectedIcon=,margin=javax.swing.plaf.InsetsUIResource[top=0,left=0,bottom=0,right=0],paintBorder=false,paintFocus=false,pressedIcon=,rolloverEnabled=false,rolloverIcon=,rolloverSelectedIcon=,selectedIcon=,text=Observables Palette]
User requested that reaction rule window be displayed Searching the deselected InternalFrame's 1 components for a WidgetPanel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type ObservablesPalette Found a WidgetPanel in the active internal frame Generated ID: 5 Searching the deselected InternalFrame's 1 components for a WidgetPanel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type ReactionRulePalette Found a WidgetPanel in the active internal frame Clearing Selections Generated ID: 6 java.awt.event.ItemEvent[ITEM_STATE_CHANGED,item=javax.swing.JCheckBoxMenuItem[,0,0,0x0,invalid,alignmentX=0.0,alignmentY=0.0,border=javax.swing.plaf.synth.SynthBorder@4c650892,flags=256,maximumSize=,minimumSize=,preferredSize=,defaultIcon=,disabledIcon=,disabledSelectedIcon=,margin=javax.swing.plaf.InsetsUIResource[top=0,left=0,bottom=0,right=0],paintBorder=false,paintFocus=false,pressedIcon=,rolloverEnabled=false,rolloverIcon=,rolloverSelectedIcon=,selectedIcon=,text=Reaction Window],stateChange=SELECTED] on javax.swing.JCheckBoxMenuItem[,0,0,0x0,invalid,alignmentX=0.0,alignmentY=0.0,border=javax.swing.plaf.synth.SynthBorder@4c650892,flags=256,maximumSize=,minimumSize=,preferredSize=,defaultIcon=,disabledIcon=,disabledSelectedIcon=,margin=javax.swing.plaf.InsetsUIResource[top=0,left=0,bottom=0,right=0],paintBorder=false,paintFocus=false,pressedIcon=,rolloverEnabled=false,rolloverIcon=,rolloverSelectedIcon=,selectedIcon=,text=Reaction Window]
User requested that the reaction frame be displayed Searching the deselected InternalFrame's 1 components for a WidgetPanel Found a component of type javax.swing.JScrollPane Found a ScrollPane in the active internal frame Found a component of type ReactionPalette Found a WidgetPanel in the active internal frame Clearing Selections Generated ID: 7 Frame iconified Searching the deselected InternalFrame's 0 components for a WidgetPanel Exception in thread "Thread-3" java.lang.IllegalArgumentException: illegal component position at java.awt.Container.addImpl(Container.java:1048) at javax.swing.JLayeredPane.addImpl(JLayeredPane.java:212) at javax.swing.JDesktopPane.addImpl(JDesktopPane.java:470) at java.awt.Container.add(Container.java:365) at javax.swing.plaf.synth.SynthDesktopPaneUI$SynthDesktopManager.deiconifyFrame(SynthDesktopPaneUI.java:350) at javax.swing.plaf.basic.BasicInternalFrameUI.deiconifyFrame(BasicInternalFrameUI.java:592) at javax.swing.plaf.basic.BasicInternalFrameUI$Handler.propertyChange(BasicInternalFrameUI.java:1416) at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:339) at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:276) at java.awt.Component.firePropertyChange(Component.java:8128) at javax.swing.JInternalFrame.setIcon(JInternalFrame.java:937) at javax.swing.JInternalFrame.pack(JInternalFrame.java:1692) at GUI.createAndDisplayGUI(GUI.java:2160) at GUI.run(GUI.java:2988) at java.lang.Thread.run(Thread.java:619) Splash Screen Hidden by Mouse Click
