Compiling on Windows

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Install Perl, available here.

Install Cygwin, available here

In Cygwin setup, make sure to install the necessary components (bash, tar, vim, perl, gcc-core, gcc-g++, make) and all their dependencies.

Download and extract the BioNetGen distribution.

Open Cygwin Bash Shell (Cygwin.bat)

Change to parent directory BioNetGen (the directory containing BNG2.pl and a Makefile).

Execute "make network3" at the command prompt. The build process can take a long time, please be patient.

At the end of the process, run_network.exe should be present in BioNetGen\bin folder.

(Tested on 64-bit Win7)

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